Easy Genomics
OPEN SOURCE
Run sequencing analysis without writing any code.
Easy Genomics is a web application for laboratories running genomic sequencing. Upload your sequence data, select a pipeline, and start the run from the browser. The analysis runs on managed cloud infrastructure, and the results come back to you.
Built by DEPT® with AWS and the Wisconsin State Laboratory of Hygiene.
Where it came from
Easy Genomics came out of a collaboration between DEPT®, AWS and the Wisconsin State Laboratory of Hygiene. The requirements were set by a working laboratory, so the application follows the order the work is actually done in. DEPT® built it and continues to maintain it.
It is open source and free to use. There is no licence fee and no subscription. Laboratories can review the code, run it on their own data, and adapt it where their processes differ.
It is used by laboratories internationally and is under active development, with new capabilities being explored and expanded.
In production
Used by laboratories internationally
Free to use
No licence fee and no subscription
Reproducible
The same pipeline and parameters every time
Built in collaboration with
What it does
It covers the whole run,
from upload to results.
01
Upload your data
Drag in sequence files and sample sheets. Easy Genomics validates them on upload and keeps every file associated with the correct laboratory, run and sample.
02
Select a pipeline and start the run
Curated open-source pipelines covering assembly, variant calling and quality control. A lab manager can preset parameters so every run is configured the same way.
03
Monitor the run
Runs are tracked task by task in the browser, with email notification when a run completes or fails.
04
You keep control
Organisations, laboratories and user permissions are managed in the app, so access to data and runs is controlled at the laboratory level.
The code
All of it is on GitHub.
The source is public. The documentation covers deployment, configuration and day-to-day operation, and the issue tracker is open to anyone using or extending it.
github.com/dept/easy-genomics
Open source · Maintained by DEPT®
Get in touch
Questions, or need help getting started?
DEPT® built Easy Genomics and maintains it. Whether you have a question about the pipelines, want a walkthrough, or need help getting set up, email us and we will point you to the right person.
Easy Genomics
Open source and free to use. Built by DEPT® with AWS and the Wisconsin State Laboratory of Hygiene.
© 2026 Easy Genomics
Easy Genomics
OPEN SOURCE
Run sequencing analysis without writing any code.
Easy Genomics is a web application for laboratories running genomic sequencing. Upload your sequence data, select a pipeline, and start the run from the browser. The analysis runs on managed cloud infrastructure, and the results come back to you.
Built by DEPT® with AWS and the University of Wisconsin.
Where it came from
Easy Genomics came out of a collaboration between DEPT®, AWS and the University of Wisconsin. The requirements were set by a working laboratory, so the application follows the order the work is actually done in. DEPT® built it and continues to maintain it.
It is open source and free to use. There is no licence fee and no subscription. Laboratories can review the code, run it on their own data, and adapt it where their processes differ.
It is used by laboratories internationally and is under active development, with new capabilities being explored and expanded.
In production
Used by laboratories internationally
Free to use
No licence fee and no subscription
Reproducible
The same pipeline and parameters every time
Built in collaboration with
What it does
It covers the whole run,
from upload to results.
01
Upload your data
Drag in sequence files and sample sheets. Easy Genomics validates them on upload and keeps every file associated with the correct laboratory, run and sample.
02
Select a pipeline and start the run
Curated open-source pipelines covering assembly, variant calling and quality control. A lab manager can preset parameters so every run is configured the same way.
03
Monitor the run
Runs are tracked task by task in the browser, with email notification when a run completes or fails.
04
You keep control
Organisations, laboratories and user permissions are managed in the app, so access to data and runs is controlled at the laboratory level.
The code
All of it is on GitHub.
The source is public. The documentation covers deployment, configuration and day-to-day operation, and the issue tracker is open to anyone using or extending it.
github.com/dept/easy-genomics
Open source · Maintained by DEPT®
Get in touch
Questions, or need help getting started?
DEPT® built Easy Genomics and maintains it. Whether you have a question about the pipelines, want a walkthrough, or need help getting set up, email us and we will point you to the right person.
Easy Genomics
Open source and free to use. Built by DEPT® with AWS and the University of Wisconsin.
© 2026 Easy Genomics
Easy Genomics
OPEN SOURCE
Run sequencing analysis without writing any code.
Easy Genomics is a web application for laboratories running genomic sequencing. Upload your sequence data, select a pipeline, and start the run from the browser. The analysis runs on managed cloud infrastructure, and the results come back to you.
Built by DEPT® with AWS and the University of Wisconsin.
Where it came from
Easy Genomics came out of a collaboration between DEPT®, AWS and the University of Wisconsin. The requirements were set by a working laboratory, so the application follows the order the work is actually done in. DEPT® built it and continues to maintain it.
It is open source and free to use. There is no licence fee and no subscription. Laboratories can review the code, run it on their own data, and adapt it where their processes differ.
It is used by laboratories internationally and is under active development, with new capabilities being explored and expanded.
In production
Used by laboratories internationally
Free to use
No licence fee and no subscription
Reproducible
The same pipeline and parameters every time
Built in collaboration with
What it does
It covers the whole run,
from upload to results.
01
Upload your data
Drag in sequence files and sample sheets. Easy Genomics validates them on upload and keeps every file associated with the correct laboratory, run and sample.
02
Select a pipeline and start the run
Curated open-source pipelines covering assembly, variant calling and quality control. A lab manager can preset parameters so every run is configured the same way.
03
Monitor the run
Runs are tracked task by task in the browser, with email notification when a run completes or fails.
04
You keep control
Organisations, laboratories and user permissions are managed in the app, so access to data and runs is controlled at the laboratory level.
The code
All of it is on GitHub.
The source is public. The documentation covers deployment, configuration and day-to-day operation, and the issue tracker is open to anyone using or extending it.
github.com/dept/easy-genomics
Open source · Maintained by DEPT®
Get in touch
Questions, or need help getting started?
DEPT® built Easy Genomics and maintains it. Whether you have a question about the pipelines, want a walkthrough, or need help getting set up, email us and we will point you to the right person.
Easy Genomics
Open source and free to use. Built by DEPT® with AWS and the University of Wisconsin.
© 2026 Easy Genomics